Plant MITE

SE2330080

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1199
Musa acuminata
SE2330080
hAT
Hat1
chr8:26390625-26390942
CTTTGCAG
TGCAGCAAGGTATGCAATACC

Secondary structure and sequence

TSD TIR

5'

3'

CTT    --   A        A    --ATAC         GTTTCGAGGTTGGCTCGGTATGGTACGATACCGGTGTACCGAGCGGTACACCAGGGTGTACACCAGGACATATCGAGCGATACACCTTGGTGTACCGAATAATTTTATATATTTTCTTTCA
   TGCA  GCA GGTATGCA TACC      TGTACCGGT                                                                                                                         
   ||||  ||| |||||||| ||||      |||||||||                                                                                                                          
   ACGT  CGT CCATACGT ATGG      ATGGCGGGC                                                                                                                         
  G    TT   A        C    CTTACC         CATGCCTGCCATACATGGTCAAGCTACTGTATGGCCATGCACCTGGAGGGCCATAGCGATGTCACGATGTCATAATATGACATCGTCACGATTTCACAATATCACATTGTCACGATGTCAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2330080

CTTTGCAGCAAGGTATGCAATACCATACTGTACCGGTGTTTCGAGGTTGGCTCGGTATGGTACGATACCGGTGTACCGAGCGGTACACCAGGGTGTACACCAGGACATATCGAGCGATACACCTTGGTGTACCGAATAATTTTATATATTTTCTTTCATACTGTAGCACTGTTACACTATAACACTTTAGCACTGCTACAGTATAATACTGTAGCACTGTAGCGATACCGGGAGGTCCACGTACCGGTATGTCATCGAACTGGTACATACCGTCCGTACCGGGCGGTACCATTCGGTACTGCATACCATGCTTTGCAG

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