Plant MITE

SE2330081

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1200
Musa acuminata
SE2330081
hAT
Hat1
chr7:11055859-11056094
GTACTTAG
GTACTTAGCAAGGTTCGCA

Secondary structure and sequence

TSD TIR

5'

3'

         T  CAA    C   -----------        CCGTACCGGTATTTCGATCTGGGCTCGGTACCGGTATGGTACGGTATACTGAGCGGTACACCCAGGTGTGCCGAGTATTGTAGCA
    GTACT AG   GGTT GCA           ATACCGTA                                                                                     
    ||||| ||   |||| |||           ||||||||                                                                                     C
    CATGG TC   CCAG CGT           ATGGTGGG                                                                                     
GATT     -  ---    A   CATAGCTTGAC        ACATGCCCGCCATACATGGCCAGGCTGGCCAACGGCCATGCACCTGGCGGACAATGGCCAGGCTCACGTGACATCGTGACATCGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2330081

GTACTTAGCAAGGTTCGCAATACCGTACCGTACCGGTATTTCGATCTGGGCTCGGTACCGGTATGGTACGGTATACTGAGCGGTACACCCAGGTGTGCCGAGTATTGTAGCACTGCTACAGTGCTACAGTGCACTCGGACCGGTAACAGGCGGTCCACGTACCGGCAACCGGTCGGACCGGTACATACCGCCCGTACAGGGTGGTACAGTTCGATACTGCAGACCCTGGTACTTAG

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