SE2330085

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1204
  • Musa acuminata
  • SE2330085
  • hAT
  • Hat1
  • chr8:31223380-31223650
  • GTAATGAC
  • ACCATGGTATGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
GTAATG    T        ATTTCGAATA     -     TACCGGGTGGTACGTACCGGTCCGACAGCATACCGGTACACGGTCCGCCCGCTACCGGATGGAACGTGCTACAGTGCTATACCATATCACTGCTACAGTGC
      ACCA GGTATGCA          GTACC GCCCG                                                                                                     
      |||| ||||||||          ||||| |||||                                                                                                      
      TGGT CCATACGT          TATGG ATGGC                                                                                                     
CAGTAA    T        ----------     C     ATGGCCACAAAGCTCCAACCGAGCCATGCCATACCATGGCACATGGCGAGCCATGTGGTTCCGCATGGCTCACCAAAATTTATCAAGAAGGAGAATGACAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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