SE2330089

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1208
  • Musa acuminata
  • SE2330089
  • hAT
  • Hat1
  • chr2:18069297-18069557
  • CCGTGGAA
  • CCGTGGAACAAGGTATGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
        AA  A        AC    TA CATACCGATGTTTCGAGGTTGGCTCGGTACGGTACAGTACCGGTGTACCGAGCGGTACATCCTGGTGTACCGAATAATTTTATATATTTTCTTCATTACTGTAG
  CCGTGG  CA GGTATGCA  ACCG  C                                                                                                        
  ||||||  || ||||||||  ||||  |                                                                                                        C
  GGTGCC  GT CCATACGT  CATG  G                                                                                                        
AA      --  A        --    -- CTTACCATGTCGAGCTATGCCCGCTATGCATGGCCAGACTGCTGTATGGCCATGCGGGCCATGGCGATATCACGATGTCATAATGTGACATCGTCACGATATCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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