SE2330096

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1215
  • Musa acuminata
  • SE2330096
  • hAT
  • Hat1
  • chr8:442498-442813
  • CTAATAAG
  • AGCAAGGTCTGCCATACC

Secondary structure and sequence

TSD    TIR
5'



3' 
CTAATA        C  CC     AAATC          GTACGGGCGGTACATACCGGTCCGATAAGCTAATGGTACGCGGACCGCCCTGTACCGGTCACTGTAGCAGTACTGTAGCTCTGTAGCAGTGCACTGTAGCAGTAGAAATGTACTGTAGTA
      AGCAAGGT TG  ATACC     GTACTGCCCG                                                                                                                        
      |||||||| ||  |||||     ||||||||||                                                                                                                         
      TCGTTCCA GC  TATGG     GGCATGGCCA                                                                                                                        
GAATAA        A  AT     --CAT          CAAAGCTAGACCCGAGCCATGGCCATGCCATACCACATGGCTCGCCATATGGGTCCACGTAGCTCATAACATCGTGACGATGTCACTGATAACGTGACATGACGATAATATTGTCACGTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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