SE2330097

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1216
  • Musa acuminata
  • SE2330097
  • hAT
  • Hat4
  • chr5:16275179-16275452
  • ATTGAGAC
  • CAAGGTCTGCCATA

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTGAGAC      C  C    CCGAAGCA        ATATCGGGCGGTACGTACCGATCCGACAGGTTACCGGTACACGGACCGCCTTGCTACAGTGCTATAGTATTATACTGTAGCACTGCTACAGTATGAAAAAAA
        CAAGGT TG CATA        TACCGCCC                                                                                                      
        |||||| || ||||        ||||||||                                                                                                      T
        GTTCCA GC GTAT        GCATGGCA                                                                                                      
CAGAGTTA      A  A    -------A        TGGCCGCAAAGCTAGGCCCGAGCCATGCCATGCCATTGCCACATGGTCCGTCATGTAGTCCCGCATGGCTCGCCATGTGGGACCACATGGCTTGTTAAAATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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