SE2330101

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1220
  • Musa acuminata
  • SE2330101
  • hAT
  • Hat2
  • chrUn_random:2916003-2916237
  • CTTATCAT
  • CAAGGTTCGCCGTACC

Secondary structure and sequence

TSD    TIR
5'



3' 
CTTATCAT       C          ----       -   CGTTTTGAC   GGCTCGGTACCGGTACGGTACGGTATACCGCTCAGTACACCCAGGTGTACCGAGCACTGTAGCAATGCTAC
        CAAGGTT GCCGTACCGT    ACCGTAC CGG         CCG                                                                       
        ||||||| ||||||||||    ||||||| |||         |||                                                                       A
        GTTCCAA CGGCATGGCC    ATGGCGG CCA         TGC                                                                       
TACTATTC       A          TGAC       A   ---------   CCGCCATGCATGGCCAGGCTGTCCGATCGCCATGCGCCTGGCGGGACATGGCCAGGCGGGCATGGCTCGTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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