Plant MITE

SE2330103

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1222
Musa acuminata
SE2330103
hAT
Hat1
chr8:7564757-7564984
GGTAAATC
ATCCATGGTATGCA

Secondary structure and sequence

TSD TIR

5'

3'

GGTAA     T        ATTTCGAA      C          GGCGGTACGTACCGGTCCAATGGCATACCGGTACGTGGACCGCCCGCTACCAGATGGACAGTGCTACAGTAAGA
     ATCCA GGTATGCA        TGGTAC GTCTAGTGCG                                                                          
     ||||| ||||||||        |||||| ||||||||||                                                                          G
     TGGGT CCATACGT        TATGGC ATGGTATGGC                                                                          
CTAAA     T        --------      -          CACAAAGCTCCAACCGAGCCATGCCATGCCATGGCCGTATGGCTCGCCATATGGTTCCAAATGGCTCGATAAAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2330103

GGTAAATCCATGGTATGCAATTTCGAATGGTACCGTCTAGTGCGGGCGGTACGTACCGGTCCAATGGCATACCGGTACGTGGACCGCCCGCTACCAGATGGACAGTGCTACAGTAAGAGGAAATAGCTCGGTAAACCTTGGTATACCGCTCGGTATGCCGGTACCGTACCGTACCGAGCCAACCTCGAAACACCGGTATGGTACGGTATTGCATACCTTGGGTAAATC

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