SE2330105

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1224
  • Musa acuminata
  • SE2330105
  • hAT
  • Hat1
  • chr10:2093352-2093621
  • TGCTATAG
  • CTATAGCATGGTATGCAATTTCG

Secondary structure and sequence

TSD    TIR
5'



3' 
TG         --          T   A     A  A   GGTACGGGCGGTACGTACCGGTCCGACGGCATACCGGTATGCAGACTGTCCGTTACCGGACGGACCGTGCTACAGTGCTACAGTAAGAGGAAGAAATA
  CTATAGCAT  GGTATGCAAT TCG ATGGT CC TCC                                                                                                  
  |||||||||  |||||||||| ||| ||||| || |||                                                                                                  T
  GATGTCGTG  CCATACGTTA GGC ATGGT AT GGC                                                                                                  
           TT          T   -     -  -   CACAAAGCTCCAACCGAGCCATACTATACCATGGTCGCATAGCTCGCCATGTAGTCCCGCATGGCTCGCTATGTGGTTCCGAATGGCTCGCTAAAATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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