Plant MITE

SE2330109

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1228
Musa acuminata
SE2330109
hAT
Hat4
chrUn_random:58128227-58128490
GTTATAAC
GTTATAACCAAGGT

Secondary structure and sequence

TSD TIR

5'

3'

              T      -     --          C TTTCGACCCGGGCTCGGTACGGTACGGTACCGGTGTATCGGGCAGTACATCACGGCGTACCGAGCGGTACACCCTAGTGTACCGAACAATTTT
GTTATAACCAAGGT CGCTGT ATCGT  ACCGTATCGA G                                                                                             
|||||||||||||| |||||| |||||  |||||||||| |                                                                                             A
CAATATTGGTTCCA GACAGT TGGCT  GCATGGCGGG C                                                                                             
              -      A     TC          - ATGGCCCGTCATGCATGGCCAGGCTGTCCAATGGCCATGGCGATGTCACGATGTCATGATATGACATCGTGACGACGTCACAATTTTTTTTAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2330109

GTTATAACCAAGGTTCGCTGTATCGTACCGTATCGACGTTTCGACCCGGGCTCGGTACGGTACGGTACCGGTGTATCGGGCAGTACATCACGGCGTACCGAGCGGTACACCCTAGTGTACCGAACAATTTTATATTTTTTTTAACACTGCAGCAGTGCTACAGTATAGTACTGTAGCACTGTAGCGGTACCGGTAACCTGTCGGACCGGTACGTACTGCCCGGTACGGGCGGTACGCTTCGGTATGACAGACCTTGGTTATAAC

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