Plant MITE

SE2330111

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1230
Musa acuminata
SE2330111
hAT
Hat2
chr2:19978917-19979240
ATCCAAAT
ATCAAGGTTCGC

Secondary structure and sequence

TSD TIR

5'

3'

ATCCAA         C  A       ---      CCGGTATTTCGACCTGGGCTCGGTACCGGTATGGTACGGTGTACCGAGTACTGTAGTATTACTATAGTGCATTACTACAGTGTACTGTTACACTGTACTGCTACAATAACAGTGCACTGCAACCGTAAA
      ATCAAGGTT GC ATACCGT   ACCGTA                                                                                                                                 
      ||||||||| || |||||||   ||||||                                                                                                                                  
      TAGTTCCAG CG GTATGGC   GCATGG                                                                                                                                 
TAAACC         A  -       TTA      CGGACCATGCCCGCCATACATGGCCAGGCTGTCCGGTCGCCATGCGCCTGGCGGGCCATGGCCAGGTTGATATCGTCACGTGACAACATCACGTGACAACGTTACGTGACATCATGACGTTGTCATGTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2330111

ATCCAAATCAAGGTTCGCAATACCGTACCGTACCGGTATTTCGACCTGGGCTCGGTACCGGTATGGTACGGTGTACCGAGTACTGTAGTATTACTATAGTGCATTACTACAGTGTACTGTTACACTGTACTGCTACAATAACAGTGCACTGCAACCGTAAACTGTACTGTTGCAGTACTACAGTGCATTGCAACAGTGCACTACAACAGTGCACTGCTATAGTTGGACCGGTACCGGGCGGTCCGCGTACCGCTGGCCTGTCGGACCGGTACATACCGCCCGTACCAGGCGGTACGATTCGGTATGGCAGACCTTGATCCAAAT

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