SE2520007

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1237
  • Brachypodium distachyon
  • SE2520007
  • Mutator
  • M2
  • Bd2:58626761-58626955
  • AAATTCTTA
  • TTCTTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
                  AAA       GGTGT   C                   C    ------       -------    CCA  CAATGATGATTTTCTTATCCATCGGAC
                     TTCTTAG     GCG CTGAGAAATGGTTATTTTT AGTC      AACAATC       GTAG   TC                           
                     |||||||     ||| ||||||||||||||||||| ||||      |||||||       ||||   ||                            
                     AAGAATC     CGC GACTCTTTATTGATAAAGA TTAG      TTGTTGG       AGTT   AG                           
ATTCTTAAAGCCAAAACGATA       -----   T                   A    CTACTA       AAAACTA    ---  TAACTCTAAACACATTCTAATTACATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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