Plant MITE

SE2510009

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1239
Brachypodium distachyon
SE2510009
Tc1/Mariner
St2
Bd2:52839928-52840145
TA
TACTCCCTCCGTTCCGGTTTATGGGGGCCCCACGCATCCCTAGGTTGAGGATTTAACTAATGTAATATGAGTTTCATATTACAAAAATCATACCATTAGAAA

Secondary structure and sequence

TSD TIR

5'

3'

    C             T       G     -                           A     T    G   C      CA     C             CTTCAAA
TACT CCTCCGTTCCGGT TATGGGG CCCCA CGCATCCCTAGGTTGAGGATTTAACTA TGTAA ATGA TTT ATATTA  AAAAT ATACCATTAGAAA       
|||| ||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||| ||||| |||| ||| ||||||  ||||| |||||||||||||       T
ATGA GGAGGCAAGGCCA ATACCCC GGGGT GCGTAGGGATCCAATTTCTAGATTGAT ACATT TACT AAA TATAGT  TTTTA TATGGTAATCTTT       
    T             T       -     T                           -     T    A   A      AC     A             TATTTTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510009

TACTCCCTCCGTTCCGGTTTATGGGGGCCCCACGCATCCCTAGGTTGAGGATTTAACTAATGTAATATGAGTTTCATATTACAAAAATCATACCATTAGAAACTTCAAATGTTTTATTTTCTAATGGTATAATTTTCATGATATAAAAATCATTTTACATAGTTAGATCTTTAACCTAGGGATGCGTTGGGGCCCCATATACCGGAACGGAGGTAGTA

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