Plant MITE

SE2550012

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1242
Brachypodium distachyon
SE2550012
PIF/harbinger
To5
Bd1:68500119-68500396
TTA
AGGGCATCTCCAACAAGGGTAC

Secondary structure and sequence

TSD TIR

5'

3'

TT         C  -----     G    --     --   TACTTATATTCTATTTCTTATTTTTTGGGCTGAGGTGGAACCAAAAGTTGAAGAGATGGTTTTGCTGCAAGATACCACTACTACACGGGTACCAAGACTAGA
  AGGGCATCT CA     ACAAG GTAC  TTAGC  AGG                                                                                                      
  ||||||||| ||     ||||| ||||  |||||  |||                                                                                                      A
  TCCCGTAGA GT     TGTTC CATG  TCCCA  TAC                                                                                                      
AT         A  TGCCC     G    TA     AG   AGTAGTGAATGGAGAAATAAAATTAGAGTAGAGAGAAAATAATATCTCTCCCATAAATAAAATATGAAAAGAAAAAAGATCGTCCGGGCAACAGTAGGAGAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550012

TTAGGGCATCTCCAACAAGGGTACTTAGCAGGTACTTATATTCTATTTCTTATTTTTTGGGCTGAGGTGGAACCAAAAGTTGAAGAGATGGTTTTGCTGCAAGATACCACTACTACACGGGTACCAAGACTAGAAAAGAGGATGACAACGGGCCTGCTAGAAAAAAGAAAAGTATAAAATAAATACCCTCTCTATAATAAAAGAGAGATGAGATTAAAATAAAGAGGTAAGTGATGACATGAACCCTATGTACGCTTGTCCCGTTGAAGATGCCCTTA

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