SE2520014

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1244
  • Brachypodium distachyon
  • SE2520014
  • Mutator
  • M4
  • Bd2:37543704-37544166
  • TAAATATAT
  • ATATATGAGTAAATTTCATAAAACCACACTTCTTGGGGTTAGGATTTCAACGGGCCGCAGTTATGACTAATGGTCTCACAAAACCACACTTTTTCGGACAGATCTTCTCACAGAACCCAAATCAGGTAATTAAAAGCATTTGATGGTGTTTCTGTCAAGTGAGACCCACATGTCGGATGCCAGGTCG

Secondary structure and sequence

TSD    TIR
5'



3' 
TAA      ---                         C           A          C                                 C     -C  A                                   A   A                T      A                      -   ---    TGTCAAACTTTTTTTGTCCACGTCAGCTTTTGCCC
   ATATAT   GAGTAAATTTCATAAAACCACACTT TTGGGGTTAGG TTTCAACGGG CGCAGTTATGACTAATGGTCTCACAAAACCACA TTTTT  GG CAGATCTTCTCACAGAACCCAAATCAGGTAATTAA AGC TTTGATGGTGTTTCTG CAAGTG GACCCACATGTCGGATGCCAGG TCG   GATG                                   
   ||||||   ||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||  || ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||| |||||||||||||||||||||| |||   ||||                                   G
   TATATA   CTCATTTAAAGTGTTTTGGTGTGAA AACCCTGATCC AAAGTTGTCC GTGTCAATACTGATTATCAGAGTGTTTTGGTGT AAAAA  CC GTCTAGAAGAGTGTCTTGGGTTTAGTCCATTAATT TCG AAACTACCACAAAGAC GTTCAC CTGGGTGTACAGCCTACGGTCC AGC   GCCC                                   
         AAT                         T           C          T                                 A     AT  -                                   C   C                T      C                      T   TCA    TAAAGGGCCCATCTGTCTCCTCGAATTGTCCCACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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