SE2550017

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1247
  • Brachypodium distachyon
  • SE2550017
  • PIF/harbinger
  • To6
  • Bd1:65829556-65829755
  • TAA
  • AGAGCATGTACAATGCAAGGTGCTTAGACAGGTGCTTACGAAAATAAACC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                           ACA        C      A    AAGCAC   T       CCA           T  A   G     C AAG
  AGAGCATGTACAATGCAAGGTGCTTAG   GGTGCTTA GAAAAT AACC      TTT TTAAGCA   GTGCTTATTTG AT GAG AGGTG C   
  |||||||||||||||||||||||||||   |||||||| |||||| ||||      ||| |||||||   ||||||||||| || ||| ||||| |    
  TCTCGTACATGTTACGTTCTACGGATC   CCACGAAT TTTTTA TTGG      AAA AATTCGT   TACGAATAAAT TG TTC TCTAC G   
AA                           CAC        C      A    --CCAA   C       AAC           C  A   G     C ATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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