SE2520022

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1252
  • Brachypodium distachyon
  • SE2520022
  • Mutator
  • M5
  • Bd1:26905416-26905632
  • ATATTATTA
  • GGTGTGACTATTTCTAAGTCGCTCGATTTTTAAG

Secondary structure and sequence

TSD    TIR
5'



3' 
ATATTATTAG   -G  A     TC           A     A  AAAT   CTTTAAAT     TC     TTCAAAT          AA       G   CATCTCCATTCTCT
          GGT  TG CTATT  TAAGTCGCTCG TTTTT AG    GAG        ATCAG  GACGT       CCGTTGGATT  GATCCAA GGT              
          |||  || |||||  ||||||||||| ||||| ||    |||        |||||  |||||       ||||||||||  ||||||| |||              C
          CCA  AC GATAA  ATTCAGTGGGC AAAAA TC    CTC        TAGTT  CTGTA       GGTAGCCTAG  TTAGGTT CTA              
ATTATTATAG   AA  -     CT           -     A  -AAT   --------     --     --CAATC          AA       G   TCTTTCACTCTCTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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