SE2520028

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1258
  • Brachypodium distachyon
  • SE2520028
  • Mutator
  • M8
  • Bd4:26301799-26302316
  • TTCTTATTT
  • GAGTAAATTTCACATAACCATACTTTTGGTGACAGTTATCTCACAAAATCACGGTTGTCTCTAATATTCTCACAAAACCACAACTTTTGGGACAGCTGGTCTCAAAAACCCTAATCTTGGTAGTTGAGCTGGTTGATGGTGTTTCCGACAACCCTCCGGGCCACCAGTCACATGCCACGTCATCTTTCCTGACCCATTTTGGATGGCTGTTTTCGACGCCGTGTTAGTGGCCT

Secondary structure and sequence

TSD    TIR
5'



3'
TTCTTATTT             AT            G   A                          CTC                      C       -A  G         -     C        G                             CA    TCC        A    C    CAC         C       A    G   GG          CG          ---G    TTGTT    T    A TT
         GAGTAAATTTCAC  AACCATACTTTT GTG CAGTTATCTCACAAAATCACGGTTGT   TAATATTCTCACAAAACCACAA TTTTGGG  CA CTGGTCTCA AAAAC CTAATCTT GTAGTTGAGCTGGTTGATGGTGTTTCCGA  ACCC   GGGCCACC GTCA ATGC   GTCATCTTT CTGACCC TTTT GAT  CTGTTTTCGA  CCGTGTTAGT    GCCT     CTAG GATA C  
         |||||||||||||  |||||||||||| ||| ||||||||||||||||||||||||||   |||||||||||||||||||||| |||||||  || ||||||||| ||||| |||||||| |||||||||||||||||||||||||||||  ||||   |||||||| |||| ||||   ||||||||| ||||||| |||| |||  ||||||||||  ||||||||||    ||||     |||| |||| |   
         CTCATTTAAAGTG  TTGGTGTGAAAA CAC GTCGATAGAGTGTTTTGGTGCCAACA   ATTATGAGAGTGTTTTGGTGTT AAAACCC  GT GACCAGAGT TTTTG GATTAGAG TATTAATTCGACCAACTACCACAAAGGCT  TGGG   TCCGGTGG CAGT TACG   CAGTAGAAG GGCTGGG AAAA CTG  GGCAAAAGTT  GGTGCAGTCA    TGGG     GGTT CTGT G  
TTTATTCTT             CC            A   C                          AAC                      -       CC  A         C     A        G                             AC    --C        G    C    ATT         C       C    G   GA          AG          AAAA    ---CT    -    A TG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End