SE2520032

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1262
  • Brachypodium distachyon
  • SE2520032
  • Mutator
  • M2
  • Bd4:31621908-31622115
  • ATACCATAT
  • GGTTTTGCTATTTCTTAGGCGACTGAGAAATAACTATTTCTTAGTTGATGATCACAACCTTTTGATTCAATCATTGAGATTCAT

Secondary structure and sequence

TSD    TIR
5'



3'
ATACCATATC  TTT  -           G  A          AC     C             AC    T      ----------   A        -ATT   GTAA
          GG   TG CTATTTCTTAG CG CTGAGAAATA  TATTT TTAGTTGATGATC  AACC TTTGAT          TCA TCATTGAG    CAT    
          ||   || ||||||||||| || ||||||||||  ||||| |||||||||||||  |||| ||||||          ||| ||||||||    |||    A
          CC   AC GATAAAGAGTC GC GATTCTTTAT  ATAAA AGTCAGCTGTTAG  TTGG AGGTTA          AGT AGTAGTTT    GTA    
 TATACCATA  CTC  A           A  A          CA     A             CA    T      CTTCTAAAAG   A        GGAT   ATTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End