Plant MITE

SE2550033

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1263
Brachypodium distachyon
SE2550033
PIF/harbinger
To11
Bd3:22163129-22163301
TTA
AGGCTCAGTTTGGCATTGC

Secondary structure and sequence

TSD TIR

5'

3'

TT      A            TGAACTGTG      TGAACTTATTTTATAATCTGCTGTGAAAAAATACACACAAAAGTAGAGAAAAG
  AGGCTC GTTTGGCATTGC         CTGCGC                                                     
  |||||| ||||||||||||         ||||||                                                     T
  TCCGAG CAAACCGTAACG         CCTAAT                                                     
AT      G            ------CCA      GGTATTAGGGCAAAAAAGTGGGCGAAAAGTGATAAAAGCACAAACCGATTGAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550033

TTAGGCTCAGTTTGGCATTGCTGAACTGTGCTGCGCTGAACTTATTTTATAATCTGCTGTGAAAAAATACACACAAAAGTAGAGAAAAGTTAGTTAGCCAAACACGAAAATAGTGAAAAGCGGGTGAAAAAACGGGATTATGGTAATCCACCGCAATGCCAAACGGAGCCTTA

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