Plant MITE

SE2510035

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1265
Brachypodium distachyon
SE2510035
Tc1/Mariner
St9
Bd5:19325732-19325971
TA
TACTCCCTCCGTTTGGGTTTATAAGGCCC

Secondary structure and sequence

TSD TIR

5'

3'

                  T        -  ACGC       TA     A            --AAT    ------------TTGACAATA     TTATTTCGGCACAAAAGATATATTGTTGGATT
TACTCCCTCCGTTTGGGT TATAAGGC CC    GGAATTT  TGTCA ACTTTGATCAAC     TGCA                     CGAGA                                
|||||||||||||||||| |||||||| ||    |||||||  ||||| ||||||||||||     ||||                     |||||                                 
ATGAGGGAGGCAAACCCA ATATTCCG GG    CTTTAAG  ACGGT TGAAACTGGTTG     ACGT                     TGTTT                                
                  T        A  ATAA       -C     G            CTAAT    TTAATATAAATCATATACATA     TCAATATCGTAATCTTTCTCAAAAAGTTATGC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510035

TACTCCCTCCGTTTGGGTTTATAAGGCCCACGCGGAATTTTATGTCAAACTTTGATCAACAATTGCATTGACAATACGAGATTATTTCGGCACAAAAGATATATTGTTGGATTCGTATTGAAAAACTCTTTCTAATGCTATAACTTTTGTATACATATACTAAATATAATTTGCATAATCGTTGGTCAAAGTGTGGCACGAATTTCAATAGGAGCCTTATATACCCAAACGGAGGGAGTA

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