Plant MITE

SE2510036

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1266
Brachypodium distachyon
SE2510036
Tc1/Mariner
St10
Bd1:52932220-52932476
TA
TACTCCCTCCGTTCCATAATTCTTGTCGAAATATTACATGTATGTAGACACTTTTTAGGAATAAAGACATCCATTTTTGGGCAAGTTTGAGACAAGAATT

Secondary structure and sequence

TSD TIR

5'

3'

           T   AT    C                     G     AC            AAG        T      C         A        ------ATAAAA   -   -   T     GTA
TACTCCCTCCG TCC  AATT TTGTCGAAATATTACATGTAT TAGAC  TTTTTAGGAATA   ACATCCAT TTTGGG AAGTTTGAG CAAGAATT            CGG AGG GAC AATAT   
||||||||||| |||  |||| ||||||||||||||||||||| |||||  ||||||||||||   |||||||| |||||| ||||||||| ||||||||            ||| ||| ||| |||||   T
ATGAGGGAGGC AGG  TTAA AACAGCTTTATAATGTACATA ATCTG  AAAAATTCTTAT   TGTAGGTA AAACCC TTTAAACTC GTTCTTAA            GTC TCT TTG TTGTG   
           T   AT    C                     G     CA            CTA        T      T         A        ATCTTAGTACTC   A   A   T     GAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510036

TACTCCCTCCGTTCCATAATTCTTGTCGAAATATTACATGTATGTAGACACTTTTTAGGAATAAAGACATCCATTTTTGGGCAAGTTTGAGACAAGAATTATAAAACGGAGGGACTAATATGTATCAGGTGTTTGTTATCTACTGCTCATGATTCTAAATTCTTGACTCAAATTTTCCCAAATATGGATGTATCTATTCTTAAAAAACGTCTAGATACATGTAATATTTCGACAACAATTTAGGATCGGAGGGAGTA

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