SE2510039

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1269
  • Brachypodium distachyon
  • SE2510039
  • Tc1/Mariner
  • St3
  • Bd2:11817270-11817530
  • N.A.
  • CTCCCTCCGTTCCTAAATGTAAGAACTCCTAGCTTTGTCCCAAGTCAAACTTCTTAATCTTTGACCAAGTTTATAGAAAAATCTACCAACAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                         C              C                TC      C                C  C      CTACAACTCCAAA    TTT        CC  C   A   ATTT
  CTCCCTCCGTTCCTAAATGTAAGAA TCCTAGCTTTGTCC AAGTCAAACTTCTTAA  TTTGAC AAGTTTATAGAAAAAT TA CAACAT             TTAG   TATTAGAT  AT GTA TAT    
  ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||  |||||| |||||||||||||||| || ||||||             ||||   ||||||||  || ||| |||     
  GAGGGAGGCAAGGATTTACATTTTT AGGATCGAAACAGG TTCAGTTTGAAGAATT  AAACTG TTCAAATATCTTTTTA AT GTTGTA             AATC   ATAGTTTA  TG TAT ATA    
AC                         C              A                TC      A                C  A      -------------    -TT        -T  A   C   CTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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