Plant MITE

SE2530041

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1271
Brachypodium distachyon
SE2530041
hAT
Hat3
Bd2:16996656-16997260
GCTTAATC
TTAATCCAGTGGCGGAT

Secondary structure and sequence

TSD TIR

5'

3'

GC    T   G        ATAG    TTGAGACAGGGTGGTCCAGTGTATAAATTTTTATCCCAATATAAATTATAACCAGCAAATTTTTACCTCAAACATACTAGTAGTATTGAATTTGGGAAGAGAAAAAAACGGCATTGGAACAATTTTGCGATAATTTCAATTCGATCAATGAGCAAATCTTAATTCGATTCAATGAAAGACCGAGAAAAATGTCGCCGGCTCCGTGTAAGCTGCTGCCTCGTCACATGCTCACGGTGACGAAGCGTATGTTTACCGTCCGCTGGCAGTCAACGATG
  TTAA CCA TGGCGGAT    GTTT                                                                                                                                                                                                                                                                                   
  |||| ||| ||||||||    ||||                                                                                                                                                                                                                                                                                   A
  AATT GGT GCCGCCTA    TCCC                                                                                                                                                                                                                                                                                   
CT    C   G        GGTA    ACCGGTCCCACCAGGTACCTGGTGGGACTTTTATGTAGGGCATATGTATATGTGATCACATAGAATTTGGGTGGTTTTTTTTTTAGTCGGGCTCGTCTATCGAGTAAAAGAGCCGGTCAAGAGCAAAAGAAAGACAACACATCACATGCGCAGTAGTGCAGTCTAGCCCAGAACATCGTCGGATCGCTAGCTAGTGTTCTTCAACCGTAGCATAACATAAAAACGGCTCGTCTGCTCGTACTCGTCCATTGTAGCGTATCATAAAGAGCAGTAGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2530041

GCTTAATCCAGTGGCGGATATAGGTTTTTGAGACAGGGTGGTCCAGTGTATAAATTTTTATCCCAATATAAATTATAACCAGCAAATTTTTACCTCAAACATACTAGTAGTATTGAATTTGGGAAGAGAAAAAAACGGCATTGGAACAATTTTGCGATAATTTCAATTCGATCAATGAGCAAATCTTAATTCGATTCAATGAAAGACCGAGAAAAATGTCGCCGGCTCCGTGTAAGCTGCTGCCTCGTCACATGCTCACGGTGACGAAGCGTATGTTTACCGTCCGCTGGCAGTCAACGATGATGATGACGAGAAATACTATGCGATGTTACCTGCTCATGCTCGTCTGCTCGGCAAAAATACAATACGATGCCAACTTCTTGTGATCGATCGCTAGGCTGCTACAAGACCCGATCTGACGTGATGACGCGTACACTACACAACAGAAAGAAAACGAGAACTGGCCGAGAAAATGAGCTATCTGCTCGGGCTGATTTTTTTTTTGGTGGGTTTAAGATACACTAGTGTATATGTATACGGGATGTATTTTCAGGGTGGTCCATGGACCACCCTGGCCACCCTATGGATCCGCCGGTGGCTTAATC

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