SE2520045

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1275
  • Brachypodium distachyon
  • SE2520045
  • Mutator
  • M9
  • Bd3:27712103-27712616
  • TTTTTATTT
  • GGGAAAATTGGCTGGGGGACACCGTTATTTTGTGGCCTTTGCCGAAACTCACCGCCGGAATGTGTCTTTGCCCAGTACTATTACAATTTTGTGGACATTTGCCAGACACATTGTATGGTCCAAAACGGAAAGTTTGACTTTTT

Secondary structure and sequence

TSD    TIR
5'



3'
TTTTTATTT   A     G            C            CC     C     T     C               C                               C   -          G T C    CG  A        T    TTT      GAATTATCGTTCTACCCTTTAGCAAATGTGTTTAGAATCTTTCAAACTCTTTGTTCGAAGCGTTTTTCTCTCCTATAGAGTGCAGCAACAAAGGTGA
         GGG AAATT GCTGGGGGACAC GTTATTTTGTGG  TTTGC GAAAC CACCG CGGAATGTGTCTTTG CCAGTACTATTACAATTTTGTGGACATTTGC AGA CACATTGTAT G C AAAA  GA AGTTTGAC TTTT   CACATT                                                                                                 
         ||| ||||| |||||||||||| ||||||||||||  ||||| ||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||| | | ||||  || |||||||| ||||   ||||||                                                                                                 T
         CCC TTTAA CGGCCTTCTGTG CAATAAAACACC  AAACG CTTTG GTGGC GCCTTACACAGAAAC GGTCATGGTAATGTTAAAGCACCTGTAAACG TCT GTGTGACGTA C G TTTT  CT TTAAACTG AAAA   TTAACC                                                                                                 
TTTATTTTT   C     A            A            -C     A     T     A               A                               A   T          G T A    AA  C        T    ---      ATGATGGTAGCATTTAGGTTAAAACTTATGAAAAAACGAAACATGCTTAGCTAAAAACTGTAGATAATTCCAGGCAGCAACCAGCTACACTCGTAAG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End