Plant MITE

SE2520048

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1278
Brachypodium distachyon
SE2520048
Mutator
M5
Bd1:31233171-31233389
ATAAAAATA
GGTGTGGCTA

Secondary structure and sequence

TSD TIR

5'

3'

ATAAAAATAG   GTG    TTTCTA      ------------------AC         ---- AAATGAGCCTTAAATATCAATCGACGTTTTCGAACGGTTAAATTAATATCTGAG
          GGT   GCTA      AGTCGC                    GATATTTAA    G                                                      
          |||   ||||      ||||||                    |||||||||    |                                                      G
          CCA   CGAT      TCAGCG                    TTAGCTGTA    C                                                      
ATAAAAATAG   AAA    CACTCG      GACAAAAAATCAATCTCTAG         CAAT GGTGACCTAAAATTAGGTTGCTATCGTTCACTCTATACTCTTTTACACCTACTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2520048

ATAAAAATAGGGTGTGGCTATTTCTAAGTCGCACGATATTTAAGAAATGAGCCTTAAATATCAATCGACGTTTTCGAACGGTTAAATTAATATCTGAGGGTCATCCACATTTTCTCATATCTCACTTGCTATCGTTGGATTAAAATCCAGTGGCTAACATGTCGATTGATCTCTAACTAAAAAACAGGCGACTGCTCACTAGCAAAACCGATAAAAATA

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