SE2520049

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1279
  • Brachypodium distachyon
  • SE2520049
  • Mutator
  • M6
  • Bd1:53458477-53459038
  • ATAATTCTT
  • TGAGTAAAATACGCTACTAGTTCATGAACTCGGCAAAAAGGAACACTTTAGCTCACGAACTCGAAAATCGCACACTTAAACCCCAAAACTGGGAC

Secondary structure and sequence

TSD    TIR
5'



3'
ATAATTCT                                       G           C           A   T               CA          AACTA                        GG              C         G                  ---   ACCTTCA    C  C -  TCGTCAAAATTGAGCACCGTGGGCTTGATAGCGACCTTAGACGAGGCAGCGGCATCAACGGCGTGGTTCTCAGGGCCCCAGAATC
        TGAGTAAAATACGCTACTAGTTCATGAACTCGGCAAAAA GAACACTTTAG TCACGAACTCG AAA CGCACACTTAAACCC  AAACTGGGAC     TGTCACTTTAGTCCAAAAACGATT  GTGAGGCTTAAACA GCCACGTGG CGCCACGTCGGTTTTGGC   GAC       CCGC GT C TC                                                                                     
        ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||| |||||||||||||||  ||||||||||     ||||||||||||||||||||||||  |||||||||||||| ||||||||| ||||||||||||||||||   |||       |||| || | ||                                                                                     C
        ACTCATTTTATGTGGTGATCAGGTACTTGAGCCGTTTTT CTTGTGAAATC GGTGCTTGAGC TTT GCGTGTGAATTTGGG  TTTGACCCTG     ACAGTGAAATCAGGTTTTTGCTAA  CACTCCGAATTTGT CGGTGCACC GCGGTGCAGCCAAAGCCG   CTG       GTGC CC G CG                                                                                     
TTCTTAAT                                       A           A           C   T               CA          ATAAC                        GG              A         G                  GTC   -------    -  - A  ATAAGCTAAAAGAGTCCTAAAAAAAAAAAACGTTTTAGTGGTACGGGCTCGCGGGCACTCCCTGTTCCGCCGGCGCGGGTCTGCC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End