SE2530051

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1281
  • Brachypodium distachyon
  • SE2530051
  • hAT
  • Hat1
  • Bd4:37036076-37036281
  • AACCTCGT
  • TCAGAGGCGGAGGCAGGGACCAGGCCAG

Secondary structure and sequence

TSD    TIR
5'



3' 
AACCTCG    A              -----------CCA      -----CCCT   CCTAGCCCCCCCTATGATTTCGAATTTCTATTTTAGTACTTGTATAATCTTTG
       TCAG GGCGGAGGCAGGGA              GGCCAG         GGC                                                     
       |||| ||||||||||||||              ||||||         |||                                                      
       AGTC CCGCCTCCGTCCTT              CCGGTC         TAC                                                     
TGCTCCA    C              TTATTATATCCCTC      TTTTCTTCT   TAAATAGTCCCTCTCAGTTTCGCATTCTTATACTACGAGTATACTACTTCAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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