Plant MITE

SE2510055

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1285
Brachypodium distachyon
SE2510055
Tc1/Mariner
St10
Bd1:52932220-52932476
TA
TACTCCCTCCGATCCTAAATTGTTGTCGAAATATTACATGTATCTAGACGTTTTTTAAGAATAGATACATCCATATTTGGGAAAATTTGAGTCAAGAATTTAGAATCATGAGCAGTAGATAACA

Secondary structure and sequence

TSD TIR

5'

3'

           A   TA    G                     C             A       T        A      A  A      T        -      --CAT  GC    GA  A  AAC
TACTCCCTCCG TCC  AATT TTGTCGAAATATTACATGTAT TAGACGTTTTTTA GAATAGA ACATCCAT TTTGGG AA TTTGAG CAAGAATT TAGAAT     GA  AGTA  TA CA   
||||||||||| |||  |||| ||||||||||||||||||||| ||||||||||||| ||||||| |||||||| |||||| || |||||| |||||||| ||||||     ||  ||||  || ||    
ATGAGGGAGGC AGG  TTAA AACAGCTTTATAATGTACATA ATCTGTGAAAAAT CTTATTT TGTAGGTA AAACCC TT AAACTC GTTCTTAA ATTTTG     CT  TTAT  AT GT   
           A   TA    G                     C             C       C        A      G  C      T        T      CCTCC  GA    AC  A  CCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510055

TACTCCCTCCGATCCTAAATTGTTGTCGAAATATTACATGTATCTAGACGTTTTTTAAGAATAGATACATCCATATTTGGGAAAATTTGAGTCAAGAATTTAGAATCATGAGCAGTAGATAACAAACACCTGATACATATTAGTCCCTCCGTTTTATAATTCTTGTCTCAAACTTGCCCAAAAATGGATGTCTTTATTCCTAAAAAGTGTCTACATACATGTAATATTTCGACAAGAATTATGGAACGGAGGGAGTA

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