SE2550057

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1287
  • Brachypodium distachyon
  • SE2550057
  • PIF/harbinger
  • To19
  • Bd3:45243041-45243393
  • TTA
  • AGGGCATCTCCAATAGTACATGTCAGCAGGTACTAAGAGTGTGCCATG

Secondary structure and sequence

TSD    TIR
5'



3'
TT         C      -----   A  TCA  AGG         --------------   G     TAGGACTTTTGAT        -- ACAAAAAGGATGAAAAGT    TAGTGGTTACCTATATAAGAAACTGCTTTGGCTCTTGTACCAAGACTTAAAGTAACAACAAAACACTTGTTGGAGAGATCTCTTGTTA
  AGGGCATCT CAATAG     TAC TG   GC   TACTAAGAG              TGT CCATG             GATGTGGA  G                  GAAG                                                                                        
  ||||||||| ||||||     ||| ||   ||   |||||||||              ||| |||||             ||||||||  |                  ||||                                                                                         
  TCCCGTAGA GTTGTT     ATG AT   CG   ATGATTCTC              ATA GGTAC             GATCATTG  G                  TAGA                                                                                        
AT         A      CCACA   A  --C  GCA         CCATCATTTATAAA   G     ------------T        TT ------------------    GGTTATCTACCAATGATTCTAGATCACGATTCTAATTTTTTCGTTATCTACTTACACTCTCCCACCTTAGGTGTTTCATTCCGAAATC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End