Plant MITE

SE2550058

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1288
Brachypodium distachyon
SE2550058
PIF/harbinger
To14
Bd1:54467871-54468204
TTA
ACAGCCCATTTGGGAACCATC

Secondary structure and sequence

TSD TIR

5'

3'

TT     C A     G A     -------     --         GGTAGAAATGATAGAAATGAAATGAAATCCAATTTTTGGTTCAATTTCATTTGGTTGAATTTGAATTCCTTGTTGAAAAATCATGTTTGTCTACCACATGAATTTGTAGAGTGAGAGACAATTCC
  ACAGC C TTTGG A CCATC       GTTTC  ATTTCATTT                                                                                                                             
  ||||| | ||||| | |||||       |||||  |||||||||                                                                                                                             A
  TGTCG G AAACC T GGTGG       TGTTC  AAGACCTTA                                                                                                                             
AT     A C     G G     TAAACTC     TT         AATAAAACTTAAGGTCTTTGCTTGAACAAACCAACCGTGCCTAAACCGGTGTCCTTAAGTTAGAGTTTAAGGAACCTTAGCGTGATATTGATTGGGGTTAAGGAGAGGTTTTCGGTAGTAAAGAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550058

TTACAGCCCATTTGGGAACCATCGTTTCATTTCATTTGGTAGAAATGATAGAAATGAAATGAAATCCAATTTTTGGTTCAATTTCATTTGGTTGAATTTGAATTCCTTGTTGAAAAATCATGTTTGTCTACCACATGAATTTGTAGAGTGAGAGACAATTCCAGAGAAATGATGGCTTTTGGAGAGGAATTGGGGTTAGTTATAGTGCGATTCCAAGGAATTTGAGATTGAATTCCTGTGGCCAAATCCGTGCCAACCAAACAAGTTCGTTTCTGGAATTCAAAATAAATTCCAGAATTCTTGTCTCAAATGGTGGGTGCCAAACGAGCTGTTA

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