Plant MITE

SE2520060

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1290
Brachypodium distachyon
SE2520060
Mutator
M5
Bd4:32448171-32448389
TTATTTGAA
AAGGGTGTGGCTA

Secondary structure and sequence

TSD TIR

5'

3'

TTATTTG  G   GTG    TTTCTAA      ------------------C         ----- AAATGAGCCTTAAATATCAATCGACATTTTCGAACTGTTGAATTAAGATCTGAG
       AA GGT   GCTA       GTCGCC                   GATATTTAA     G                                                      
       || |||   ||||       ||||||                   |||||||||     |                                                       
       TT CCA   CGAT       CAGCGG                   TTAGCTGTA     A                                                      
AAGTTTA  G   AAA    CACTCGC      ACAAAAAATCAATCTCTAG         CAATC GTAACCTAAAATTAGGTTGCTATCATTCACTCTCTACTCTTTTACACTTACTGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2520060

TTATTTGAAGGGTGTGGCTATTTCTAAGTCGCCCGATATTTAAGAAATGAGCCTTAAATATCAATCGACATTTTCGAACTGTTGAATTAAGATCTGAGGGTCATTCACATTTTCTCATCTCTCACTTACTATCGTTGGATTAAAATCCAATGACTAACATGTCGATTGATCTCTAACTAAAAAACAGGCGACCGCTCACTAGCAAAACCGTTATTTGAA

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