SE2520066

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1296
  • Brachypodium distachyon
  • SE2520066
  • Mutator
  • M13
  • Bd1:60146802-60147256
  • GAAAAGATA
  • GAGTAAATTTCGCAAAACCACGGTTTTTGGGGTACTCGTATCGCTGAATCACAGTTAACGAAAAGCGTTTCGCGGAACCACACTTTTTAAATCAAGTTGCCTCAGTCAGCCCAAAACCTGATGGTTTCGCGGTTTTGCTTGATTTTTTTACCGGTGAGACCCACTTGTCGAACGCCA

Secondary structure and sequence

TSD    TIR
5'



3'
GAAAAGATA                 C AC        G    C    A   C                -    G    T            CT    AAA        C         -  C   ACC   -      C                    T  C    A           C A      - G    CCTTGAAAACTTGCGGGAGTGAGAAAGGGGCTGGGG
         GAGTAAATTTCGCAAAA C  GGTTTTTG GGTA TCGT TCG TGAATCACAGTTAACG AAAA CGTT CGCGGAACCACA  TTTT   TCAAGTTG CTCAGTCAG CC AAA   TGA TGGTTT GCGGTTTTGCTTGATTTTTT AC GGTG GACCCACTTGT G ACGCCA C CCGG                                    
         ||||||||||||||||| |  |||||||| |||| |||| ||| |||||||||||||||| |||| |||| ||||||||||||  ||||   |||||||| ||||||||| || |||   ||| |||||| |||||||||||||||||||| || |||| ||||||||||| | |||||| | ||||                                    G
         CTCATTTAAAGTGTTTT G  TCAAAAAC CCGT AGCA AGC GCTTGGTGTCAATTGC TTTT GCAA GTGTCTTGGTGT  AAAA   AGTTCAAC GAGTCAGTC GG TTT   GCT ACCAAA CGCCAAAACGAACTAAAGAA TG CCAC CTGGGTGGACA C TGCGGT C AGCC                                    
ATAGTAAAG                 A CA        A    C    C   A                C    G    -            AT    CTC        A         C  C   --C   C      C                    -  A    -           A A      A -    GGGGTTGGGCTGGATTGGGCAATCGGGCGCTAATTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End