Plant MITE

SE2530069

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1299
Brachypodium distachyon
SE2530069
hAT
Hat6
Bd5:19417655-19417837
GTATGATG
TATGATGCAGTGGCGTAGCCAG

Secondary structure and sequence

TSD TIR

5'

3'

G   G    -           C  CTAAAATTT  A          -ACA     AATATTCATACAAATTTAGTTATTTTGATGTTTTGATTC
 TAT ATGC AGTGGCGTAGC AG         CC GGGTGGTCCA    GTGAA                                       
 ||| |||| ||||||||||| ||         || ||||||||||    |||||                                        
 GTA TATG TCACCGCATCG TC         GG CCCACCAGGT    GGTGG                                       
    G    G           A  -CCCCCAAC  -          ACCT     GACTCTAAAAGGTTAGGAAATATATTGTATCAATTTTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2530069

GTATGATGCAGTGGCGTAGCCAGCTAAAATTTCCAGGGTGGTCCAACAGTGAAAATATTCATACAAATTTAGTTATTTTGATGTTTTGATTCTTTTTTAACTATGTTATATAAAGGATTGGAAAATCTCAGGGTGGTCCATGGACCACCCGGCAACCCCCCTAGCTACGCCACTGGTATGATG

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