SE2550073

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1303
  • Brachypodium distachyon
  • SE2550073
  • PIF/harbinger
  • To14
  • Bd3:28928504-28928828
  • TAA
  • ACAGCCCGTTTGGCAACCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA     C         A   AGAA        -----  -  GGTTGAAATGAAATGAAATACAATTTTTGATAGGATTTCATTTGGTTGAATTTGAATTCCGGGTTCAAAAATCATGTTTGTCTACCACATGAAATTGTAGAGTGAGAGACAATTTTAGAGAAAT
  ACAGC CGTTTGGCA CCA    TTCATTTC     AT TT                                                                                                                            
  ||||| ||||||||| |||    ||||||||     || ||                                                                                                                            G
  TGTCG GCAAACCGT GGT    AGTAAACC     CT AA                                                                                                                            
AA     A         G   ----        CGTAT  T  GACCTTAAGTAAAACTTAAGGTCTTTGGTCGAACAAACCCACCGTGCCTTAACCAGTATCCTTAGGTTAGAGTTTAAAGTACCTTAATGTGATATTGATTGGGGTTAAAAAGAGATTTTCGGTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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