Plant MITE

SE2510075

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1305
Brachypodium distachyon
SE2510075
Tc1/Mariner
St3
Bd1:52780642-52780899
TA
TACTACCTCCGTTCCTAAATATAAGATGTCCTAGCTTTGTCCTAATTCAAACTTCTTGAAGTTTGACCAAGTTTATAGAAAAATCTACTAACATCTATGACTCCAAATTAGT

Secondary structure and sequence

TSD TIR

5'

3'

    A          T          T                  T    A      G               T         TCT     C        CTC     T   TTCATTAAATCTGCCATT
TACT CCTCCGTTCC AAATATAAGA GTCCTAGCTTTGTCCTAA TCAA CTTCTT AAGTTTGACCAAGTT ATAGAAAAA   ACTAA ATCTATGA   CAAAT AGT                  
|||| |||||||||| |||||||||| |||||||||||||||||| |||| |||||| ||||||||||||||| |||||||||   ||||| ||||||||   ||||| |||                  A
ATGA GGAGGCAAGG TTTGTATTCT CAGGATCGAAACAGGATT AGTT GAAGAA TTCAAACTGGTTTAA TATCTTTTT   TGATT TAGATGTT   GTTTA TCA                  
    G          T          T                  C    A      G               -         --C     C        ATA     C   TATGATACTTTTATATAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510075

TACTACCTCCGTTCCTAAATATAAGATGTCCTAGCTTTGTCCTAATTCAAACTTCTTGAAGTTTGACCAAGTTTATAGAAAAATCTACTAACATCTATGACTCCAAATTAGTTTCATTAAATCTGCCATTATATATATTTTCATAGTATACTCATTTGATATTGTAGATCTTAGTCTTTTTCTATAATTTGGTCAAACTTGAAGAAGATTGACTTAGGACAAAGCTAGGACTTCTTATGTTTTGGAACGGAGGGAGTA

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