Plant MITE

SE2550083

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1313
Brachypodium distachyon
SE2550083
PIF/harbinger
To24
Bd3:1060916-1061116
TGA
AGAGCATGTCCAATGCAAGATGCTTAAGGTAGTGCTACAAAATTAAACCGGTTTATTCTCAAGCACCGGTGCTTATTTTTATACTAGAGGTGCTT

Secondary structure and sequence

TSD TIR

5'

3'

TG         C         A      A  TA     ---       T          -AT   C              -AT       CT G        AA
  AGAGCATGT CAATGCAAG TGCTTA GG  GTGCT   ACAAAAT AAACCGGTTT   TCT AAGCACCGGTGCTT   TTTTATA  A AGGTGCTT  
  ||||||||| ||||||||| |||||| ||  |||||   ||||||| ||||||||||   ||| ||||||||||||||   |||||||  | ||||||||   
  TCTCGTACA GTTACGTTC ACGAAT CC  CACGA   TGTTTTA TTTGGCCGAA   AGA TTCGTGGCCACGAA   AAGATAT  T TCCACGAA  
AG         A         C      C  TC     ATG       -          AAC   -              CAC       CC G        TT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550083

TGAGAGCATGTCCAATGCAAGATGCTTAAGGTAGTGCTACAAAATTAAACCGGTTTATTCTCAAGCACCGGTGCTTATTTTTATACTAGAGGTGCTTAATTAAGCACCTGTCCTATAGAACACAAGCACCGGTGCTTAGACAAAAGCCGGTTTATTTTGTGTAAGCACCTCCCTAAGCACCTTGCATTGAACATGCTCTGA

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