SE2550085

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1315
  • Brachypodium distachyon
  • SE2550085
  • PIF/harbinger
  • To13
  • Bd2:27379714-27379959
  • TAA
  • AGAGCATC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA  A     -   AACAAGGAGAACTACACGGGTACCAAGAAACAAATGACCAATGTGGAGGAGAGATGAATACCACATCTAAGTAGTGGTTACTTGAAGAAGTAACAGGTACTACACGGAT
  AG GCATC CTC                                                                                                             
  || ||||| |||                                                                                                             A
  TC CGTAG GGT                                                                                                             
AA  C     A   TACCACCAACTATGATTTTAAGAAGAGAGAGATAAAGTTATACACAAGAAAAAAGAATAAGCAAAGAAAAAGAACTACCCGGGTATACAGTAGAAGAAAAGACAGAACC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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