SE2520086

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1316
  • Brachypodium distachyon
  • SE2520086
  • Mutator
  • M14
  • Bd5:11827750-11828341
  • TTGATTTAT
  • TGATTTATGGGTTAATTGGATCTATGCCACTCTCTATTCCACCGGTTGAAAATATGCCATTAAAAAAACTTGACTTGGAGAAATGCCACTCAACTTTTTTATACCTCTATTCATGCCATTTTGTCCA

Secondary structure and sequence

TSD    TIR
5'



3'
T   T   T                  C    C      C         AAA           A                            -AAC            C    C               ATA     A A    CT TC    TAC       CATAGCTCTATACAAATAATTTTTTCCCATCCTAAGTCAAACAATTTTATTCTTCTTATTCCCCACGCGTTTCTCATATCCCGTCCCTAAGGGTGGACTCATATTACTGTTTTTTATTTTCTGTAGTTTTATAGAT
 TGA TTA GGGTTAATTGGATCTATG CACT TCTATT CACCGGTTG   ATATGCCATTA AAAAACTTGACTTGGAGAAATGCCACTC    TTTTTTATACCT TATT ATGCCATTTTGTCCA   CCAGC C CATA  G  TAGA   GTATAGA                                                                                                                                        
 ||| ||| |||||||||||||||||| |||| |||||| |||||||||   ||||||||||| ||||||||||||||||||||||||||||    |||||||||||| |||| |||||||||||||||   ||||| | ||||  |  ||||   |||||||                                                                                                                                        T
 ATT AGT CCCAATTAACCTAGATAC GTGA AGATAA GTGGCCAAT   TATACGGTAAT TTTTTGAACTGAATCTCTTTACGGTGAG    AAAGGATATGGA ATAG TACGGTAAGACAGGT   TTCTG G TTAT  T  ACAA   ATTTTAT                                                                                                                                        
T   T   T                  C    T      A         CTC           G                            ATCA            T    T               GAA     - -    -- -C    -GT       GTACATAAAGTCGTATTGTAATAAATGGTATTATGGCAATAAATGTTGCAAGTTACCATACAAGCTCAGAAGGTCCGCGGTATTTCCAATTTTTTATTATTAAGTTTAAACCGGGTTTTAAGTTAGAAGAGTCTTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End