Plant MITE

SE2530087

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1317
Brachypodium distachyon
SE2530087
hAT
Hat7
Bd1:56750446-56750619
AATACGGT
CGGTCAGGGGCGAAGCCA

Secondary structure and sequence

TSD TIR

5'

3'

AATA  --G         A     GAAAAAT      T  -  A  ATCCTTTAGAATTCACTGGTGTCATTGCATATTACTAGAAGCAAT
    CG   TCAGGGGCG AGCCA       ACATCA TG GG TC                                             
    ||   ||||||||| |||||       |||||| || || ||                                              
    GC   AGTCCCCGC TCGGT       TTCGTA AC AC AG                                             
  TG  ATA         C     -GGCACA      -  C  -  TTTATTGTAGTTACTGAAGAATGATTAGGAAGAATCTTTATCTCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2530087

AATACGGTCAGGGGCGAAGCCAGAAAAATACATCATTGGGATCATCCTTTAGAATTCACTGGTGTCATTGCATATTACTAGAAGCAATTCTCTATTTCTAAGAAGGATTAGTAAGAAGTCATTGATGTTATTTGACACCAATGCTTACACGGTGGCTCCGCCCCTGAATACGGT

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