SE2550089

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1319
  • Brachypodium distachyon
  • SE2550089
  • PIF/harbinger
  • To17
  • Bd5:19519097-19519418
  • TAA
  • AGGGCCTCTTTGATTCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA     C           CATGAT    AAAA         -----    CAA          GCAATG  ----  GC   ---   G  TCCTACAGAATTGTGATTAGACAAATGTTTGTTTGATTGAACACATGAAAAAACAAAGGAATTTGAAAAAGAGGTTGGAGTG
  AGGGC TCTTTGATTCA      AGGA    TATAGGAAT     AGGA   TCGTAGGATT      TC    AT  CCA   TTC AA                                                                                  
  ||||| |||||||||||      ||||    |||||||||     ||||   ||||||||||      ||    ||  |||   ||| ||                                                                                   
  TCCCG GGAAACTAAGT      TCCT    GTATCCTTA     TCCT   CTTAGGAATC      CT    AA  AGG   TAC TT                                                                                  
AA     A           -----T    AAAA         AAACC    AAA          ------  AAAA  --   ATA   -  AACAAACTAAACATCCTAACTTGGAGTACCCTTTCAAAGGATTCCTAAGGTAACGTGATGTAAAGTATCCTAAAAAAGGTAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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