Plant MITE

SE2510092

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1322
Brachypodium distachyon
SE2510092
Tc1/Mariner
St12
Bd3:21788525-21788782
TA
TACTCCCTCCGTTCCAAAATGTAGGGCATATAACTTTGTTGACGGTCA

Secondary structure and sequence

TSD TIR

5'

3'

                           A         -      G    AATT       C    A    C A    A     AAT    A   C    A  C     ----GA     ATTAGATACATTG
TACTCCCTCCGTTCCAAAATGTAGGGC TATAACTTT GTTGAC GTCA    TTCTAAA TTTG CCAA C TATA CAAAG   ATCA CAT TACG TG CAAAT      GTATC             
||||||||||||||||||||||||||| ||||||||| |||||| ||||    ||||||| |||| |||| | |||| |||||   |||| ||| |||| || |||||      |||||             T
ATGAGGGAGGCAAGGTTTTATATCCCG ATATTGAAA CAACTG CAGT    AAGATTT AAAC GGTT G ATAT GTTTT   TAGT GTA ATGT AC GTTTG      TAATA             
                           C         A      A    --GT       C    C    C A    C     CCT    C   T    C  A     ATTCTA     CTTTTATATAAAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510092

TACTCCCTCCGTTCCAAAATGTAGGGCATATAACTTTGTTGACGGTCAAATTTTCTAAACTTTGACCAACCATATAACAAAGAATATCAACATCTACGATGCCAAATGAGTATCATTAGATACATTGTGAAATATATTTTCATAATATCTTAGTTTGACACTGTATATGCTGATTCCTTTTGCTATAAGCTTGGCCAAACTTTAGAATGTGACAGTCAACAAAAGTTATACGCCCTATATTTTGGAACGGAGGGAGTA

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