Plant MITE

SE2550099

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1329
Brachypodium distachyon
SE2550099
PIF/harbinger
To20
Bd1:30586636-30586977
TTA
AGGGCATGTACAATGGTTGAT

Secondary structure and sequence

TSD TIR

5'

3'

TT     A          -T    AAGA  G    ----    TA   ATTCCACGTCAATTAAAAAAGACAACAAAACATGTTGTACAATGGGTTATCTCTTAGTGTTCTATCTTAGAATTAATGTTTAGATGAATAAAATTAACTAAATAAATGCTAAGAAAATGTGAAATCTGG
  AGGGC TGTACAATGG  TGAT    CT TTTT    AATT  GGC                                                                                                                                 
  ||||| ||||||||||  ||||    || ||||    ||||  |||                                                                                                                                  
  TCCCG ACATGTTACC  ACTG    CA GTAG    AGAA  TCG                                                                                                                                 
AT     C          CC    ----  -    GAAA    --   TTACGGTGTATACTATTTTAGACTGCACCTTCTCTCTCTTTGCTTCTTTTCCGTGTTCGTAAGAGAATTCATTCTCTACTAGAGAAGTGTTCTTACTATTCCGTTTCTATTCCGTTTAAATGGTAACAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550099

TTAGGGCATGTACAATGGTTGATAAGACTGTTTTAATTTAGGCATTCCACGTCAATTAAAAAAGACAACAAAACATGTTGTACAATGGGTTATCTCTTAGTGTTCTATCTTAGAATTAATGTTTAGATGAATAAAATTAACTAAATAAATGCTAAGAAAATGTGAAATCTGGTACAATGGTAAATTTGCCTTATCTTTGCCTTATCATTCTTGTGAAGAGATCATCTCTTACTTAAGAGAATGCTTGTGCCTTTTCTTCGTTTCTCTCTCTTCCACGTCAGATTTTATCATATGTGGCATTGCTAAGAAAAGGATGACGTCACCCCATTGTACACGCCCTTA

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