Plant MITE

SE2550103

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1333
Brachypodium distachyon
SE2550103
PIF/harbinger
To26
Bd2:9488536-9488783
TTA
AGGGTGTGTTTGGTTTGTGCCAAATCTAGCCCTACCAAATG

Secondary structure and sequence

TSD TIR

5'

3'

TT               T -T     AT      CTA       TG     GA  -  GTTT  -----   TTTTTTGGCTAACAATTTGCCAACCCTCACTTTGTCAACTATTTGGCAAGAATATGTGA
  AGGGTGTGTTTGGTT G  GCCAA  CTAGCC   CCAAATG  GGCAA  AT TG    GC     TAA                                                           
  ||||||||||||||| |  |||||  ||||||   |||||||  |||||  || ||    ||     |||                                                           G
  TCCCACACAAACCAA C  TGGTT  GATCGG   GGTTTAT  TAACC  GT GG    TT     AAA                                                           
AT               C CT     GT      TAC       --     --  C  ----  ACTAC   ACCGAGAACAAACCAAACAACGGTTTTTAAACCAACGGTTATACTTCATGATGAAGAGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550103

TTAGGGTGTGTTTGGTTTGTGCCAAATCTAGCCCTACCAAATGTGGGCAAGAATTGGTTTGCTAATTTTTTGGCTAACAATTTGCCAACCCTCACTTTGTCAACTATTTGGCAAGAATATGTGAGTGAGAAGTAGTACTTCATATTGGCAACCAAATTTTTGGCAACAAACCAAACAAGAGCCAAAACATCATTGGCTGCCAATTATTTGGCATGGCTAGTGTTGGTTCCCAACCAAACACACCCTTA

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