SE2550104

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1334
  • Brachypodium distachyon
  • SE2550104
  • PIF/harbinger
  • To10
  • Bd3:5582879-5583168
  • TAA
  • AGAGCAAGAATAATAGTGGGCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA         A       --G    ATAA       ---AC   A    --  TATTATTTTGATGCTTAGTTGGAGGAAAGAGAAGAGGAGAGAGAAAAAAAGTGGGCTGTTAACTAGTAGCCAGCGGCAACACGTGCTCCTAGGC
  AGAGCAAGA TAATAGT   GGCT    ACTGGTT     AAG ATTA  AA                                                                                              
  ||||||||| |||||||   ||||    |||||||     ||| ||||  ||                                                                                              A
  TCTCGTTCT ATTATCA   TCGG    TGACCGA     GTA CGGT  AG                                                                                              
AA         A       ATA    ACGA       CATTC   A    AC  TAGAAATTCATCATATTATCAATCGTACATATTATTCAACCAATATTCTTTGTAATGAAATAATCATCGTTCGAGTGTAATGTCAGAGTGTTCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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