SE2530107

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1337
  • Brachypodium distachyon
  • SE2530107
  • hAT
  • Hat14
  • Bd5:13199095-13199297
  • CCCCAATG
  • GCAGGGGCGGACCCAGCCGGGTG

Secondary structure and sequence

TSD    TIR
5'



3' 
CCCCAAT    G           ----------CC        --   C    TCCGCCCCACCCAATAAATTTGAAAATCCTTTTATCATAAGTAAAAAAATCTAAA
       GCAG GGCGGACCCAG            GGGTGATT  GGG GGGG                                                       
       |||| |||||||||||            ||||||||  ||| ||||                                                        
       CGTC CCGCCTGGGTC            CCCACTTT  TAT CACA                                                       
GTAACCC    A           CAAAAGTTTTAA        TT   -    TAAAAGTTGTAACCCACCCCGTTTATGTGATGTTAAATAATAAAAGAGATTAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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