SE2550109

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1339
  • Brachypodium distachyon
  • SE2550109
  • PIF/harbinger
  • To13
  • Bd4:16146893-16147141
  • TAA
  • AGGGCATCTTCAACAATTGTTACTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA             ---CA          ----------CACG   AGCAAGAAATACTAGACCAATGAGAACAAGATTTGAATAAAATAAATAGGTAGTGGTTACTTGAAGAAGTAGCAGCCTCTACGC
  AGGGCATCTTCAA     ATTGTTACTA              GGT                                                                                    
  |||||||||||||     ||||||||||              |||                                                                                     
  TCCCGTAGAGGTT     TAACAATGAT              GAG                                                                                    
AA             ACCAC          TAAAAAAAGAGAGA   AAGAACTCATATGTAAAAATTAAAAATAAGAGAAGAGAAAGAACTACCTGGGTTTACAGTAGGAGAAGAAAAAAGAACCATGGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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