SE2550111

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1341
  • Brachypodium distachyon
  • SE2550111
  • PIF/harbinger
  • To25
  • Bd3:31965433-31965689
  • GAA
  • GGGTCTGTTTGGTTCATGCC

Secondary structure and sequence

TSD    TIR
5'



3' 
GAA    C          A    CAAA             AAG        --  TAT    ATT      TTGTTTGGTTGAGTGCCAAAATTTTGGTTGCCAAAAGGAATCTTGCCAACTCTACACACAT
   GGGT TGTTTGGTTC TGCC    TTTGTCCTACCAA   TTTGGCAA  CC   ATTT   TGGTCT                                                             
   |||| |||||||||| ||||    |||||||||||||   ||||||||  ||   ||||   ||||||                                                             C
   CCCA ACAAACCAAG ATGG    GAACGGGATGGTT   AACGGTTG  AA   CCGA   TCGGTT                                                             
AAG    C          A    TTAA             AAA        TT  ---    ---      ATATAACCGATTCCTAAGCAACCAGGTACCAAACGGTTTTTCAACCGTTCTAAACACTCCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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