Plant MITE

SE2550113

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1343
Brachypodium distachyon
SE2550113
PIF/harbinger
To2
Bd1:30754284-30754554
TTA
AGGGCTCATTCGGTTTGCAGGATTCTTAAAC

Secondary structure and sequence

TSD TIR

5'

3'

TT     T A                -CTT    GATTTA     GATTT AACCCTTAGGATTTTTTTTTCTATGTGTAGCATTCTTTTCATAGGAATGGACATGCTAGATTCCTAAGGAATGTGTCCAAATTGGCC
  AGGGC C TTCGGTTTGCAGGATT    AAAC      TACAT     C                                                                                       
  ||||| | ||||||||||||||||    ||||      |||||     |                                                                                       C
  TCCCG G AAGCCAAACGTCCTAA    TTTG      TATCA     T                                                                                       
AT     T C                AACT    TATCCT     ----- TTTCACCTCCTAACCTTATGGTACGTGTAACGTTAGGTATCCTAAAATTTTACTCTAGAGTGGATTACAAATCTTAGGTATCCTTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550113

TTAGGGCTCATTCGGTTTGCAGGATTCTTAAACGATTTATACATGATTTCAACCCTTAGGATTTTTTTTTCTATGTGTAGCATTCTTTTCATAGGAATGGACATGCTAGATTCCTAAGGAATGTGTCCAAATTGGCCCAATTCCTATGGATTCTAAACATTAGGTGAGATCTCATTTTAAAATCCTATGGATTGCAATGTGCATGGTATTCCAATCCTCCACTTTTACTATTCCTATGTTTTCAAAATCCTGCAAACCGAACGTGCCCTTA

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