SE2550117

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1347
  • Brachypodium distachyon
  • SE2550117
  • PIF/harbinger
  • To27
  • Bd3:32375888-32376201
  • TAA
  • AGGCCCGCTTTGATTCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   C  G          A       - CAAAGGATTTTTGGAGGATTTCGAATCCTCAGGAATTTTTGCTACGTGGTTCCTTTGATTCAAAAGATTACAAACCATAGGAAATTTTTCTTAGGATTCATTTCTACTAGGTTTTGTAGGAAAATTTC
  AGG CC CTTTGATTCA AAAAATT C                                                                                                                                
  ||| || |||||||||| ||||||| |                                                                                                                                C
  TCC GG GAAACTAAGT TCCTAAA G                                                                                                                                
AA   C  A          G       A TTTTGCGTCCTTATCCTTTATATGTCCCAGTTTCACCGTACAGTAGAAATTATGATGTCCTTAATCTACCACAAACTAACACGTGTCCTTTTTCTATCCTAAGAATAATGTTACTCCAACCTAACCTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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